Merge pull request #3583 from jadecci/master

Fix bugs with `fsl_out=True` and `lta_out=True`

Author: effigies

.zenodo.json

@@ -900,7 +900,12 @@
       "affiliation": "University of Tübingen and MPI for Biological Cybernertics",
       "name": "Bannert, Michael M.",
       "orcid": "0000-0003-1010-7517"
-    }
+    },
+    {
+      "affiliation": "Research Centre Juelich",
+      "name": "Wu, Jianxiao",
+      "orcid": "0000-0002-4866-272X",
+    },
   ],
   "keywords": [
     "neuroimaging",

nipype/interfaces/freesurfer/utils.py

@@ -1966,7 +1966,7 @@ def _format_arg(self, name, spec, value):
         if name == "lta_in" and self.inputs.invert_lta_in:
             spec = "--lta-inv %s"
         if name in ("fsl_out", "lta_out") and value is True:
-            value = self._list_outputs()[name]
+            value = self._list_outputs()[f'{name[:3]}_file']
         return super()._format_arg(name, spec, value)
 
     def _list_outputs(self):