From 79d06e9ae4669307a62f51f9af29261a60b992a0 Mon Sep 17 00:00:00 2001
From: Fahad Alam Jamal <fahad270505@gmail.com>
Date: Sun, 2 Nov 2025 10:59:41 +0000
Subject: [PATCH] BUG: Skip axis=1 concat in merge for empty non-key columns
 (#62949)

---
 doc/source/whatsnew/v3.0.0.rst           |  1 +
 pandas/core/reshape/merge.py             |  9 ++++++++-
 pandas/tests/reshape/merge/test_merge.py | 15 +++++++++++++++
 3 files changed, 24 insertions(+), 1 deletion(-)

diff --git a/doc/source/whatsnew/v3.0.0.rst b/doc/source/whatsnew/v3.0.0.rst
index 12f522301e121..0922f23016b54 100644
--- a/doc/source/whatsnew/v3.0.0.rst
+++ b/doc/source/whatsnew/v3.0.0.rst
@@ -1206,6 +1206,7 @@ Reshaping
 - Bug in :meth:`DataFrame.merge` where user-provided suffixes could result in duplicate column names if the resulting names matched existing columns. Now raises a :class:`MergeError` in such cases. (:issue:`61402`)
 - Bug in :meth:`DataFrame.merge` with :class:`CategoricalDtype` columns incorrectly raising ``RecursionError`` (:issue:`56376`)
 - Bug in :meth:`DataFrame.merge` with a ``float32`` index incorrectly casting the index to ``float64`` (:issue:`41626`)
+- Bug in :meth:`DataFrame.join`` when joining with empty columns of differing dtypes (:issue:`62949``)
 
 Sparse
 ^^^^^^
diff --git a/pandas/core/reshape/merge.py b/pandas/core/reshape/merge.py
index 571f708ccf108..16c925966cd9c 100644
--- a/pandas/core/reshape/merge.py
+++ b/pandas/core/reshape/merge.py
@@ -1131,7 +1131,14 @@ def _reindex_and_concat(
 
         left.columns = llabels
         right.columns = rlabels
-        result = concat([left, right], axis=1)
+        if len(left.columns) == 0 and len(right.columns) == 0:
+            result = left.copy()
+        elif len(left.columns) == 0:
+            result = right.copy()
+        elif len(right.columns) == 0:
+            result = left.copy()
+        else:
+            result = concat([left, right], axis=1)
         return result
 
     def get_result(self) -> DataFrame:
diff --git a/pandas/tests/reshape/merge/test_merge.py b/pandas/tests/reshape/merge/test_merge.py
index d188cb396a7da..9ac39b8957657 100644
--- a/pandas/tests/reshape/merge/test_merge.py
+++ b/pandas/tests/reshape/merge/test_merge.py
@@ -738,6 +738,21 @@ def test_join_append_timedeltas2(self):
         )
         tm.assert_frame_equal(result, expected)
 
+    def test_join_empty_columns_warning(self):
+        pd.set_option("infer_string", True)
+        df = DataFrame({"a": "x", "b": ["y", "z"]}).set_index(["a", "b"])
+        df.columns = Index([], dtype="int64")
+        ser = DataFrame({"b": ["y", "z"], "value": [1, 2]}).set_index("b")["value"]
+
+        with tm.assert_produces_warning(None):  # No warning expected
+            result = df.join(ser, on="b")
+
+        expected = DataFrame(
+            {"value": [1, 2]},
+            index=MultiIndex.from_tuples([("x", "y"), ("x", "z")], names=["a", "b"]),
+        )
+        tm.assert_frame_equal(result, expected)
+
     @pytest.mark.parametrize("unit", ["D", "h", "m", "s", "ms", "us", "ns"])
     def test_other_datetime_unit(self, unit):
         # GH 13389