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I noticed cache clear wasn't working and always used purge instead. It was a mistake introduced by 671a821 (downstream of aesara-devs/aesara#1312).
This changed many time.time() to to time.perf_counter(). But here it was a mistake. The units are wrong for the logic used in refresh to denote files that are "too old", as it compares the age of a file with the os stats:
pytensor/pytensor/link/c/cmodule.py
Lines 369 to 375 in 8ebff26
The whole thing is a bit over-engineered but I don't want to touch it.